Hands-on tutorial materials


GENESIS Tutorial on CBI Annual Meeting 2017 (Oct. 5 (Thr.), 2017)

On CBI Annual Meeting 2017, at Tower Hall Funabori.
Please make sure that this GENESIS tutorial is given in Japanese.
Registration information can be found here (n Japanese).(registration is closed)

Materials (in japanese)
Lecture: GENESIS overview (Slides )
Tutorial 1: Basic usage of GENESIS (Slides , Materials (tar.bz2))
Tutorial 2: Free energy calculation methods in GENESIS (Slides , Materials (zip))

(2017/10/10) Slides of tutorial 2 updated (corrections of file path etc.)
(2017/10/6) Materials of tutorial 2 updated (include also output data and change file compression type)

 GENESIS Tutorial in International Workshop “Frontiers in Computational Biophysics and Biochemistry” (Feb. 27-Mar. 1, 2017)

Environmental Settings: Example environment setting files
Tutorial 1
: Basic MD (Slides , Materials)
Tutorial 2: Advanced MD (Slides , Materials)
Tutorial 3: REMD (Slides , Materials)
Tutorial 4: String Method (Slides , Materials)

AICS Software “GENESIS” Hands-On Tutorial (Jan. 11, 2017)

Slides in PDF format (Japanese): Lecture part , Exercise part

 GENESIS Lecture for Post-K Priority Issue 01 (Sep. 7, 2016)

Slides in PDF format (Japanese): Lecture part , Exercise part

GENESIS 1.0 or before

AICS Software “GENESIS” Hands-On Tutorial (Sep. 4, 2015)

Lecture slides in PDF format (Japanese)

 AICS Software “GENESIS” Hands-On Tutorial (Jun. 17, 2014)

Lecture slide in PDF format (Japanese) 
Lecture by Dr. Chigusa Kobayashi in YouTube (Japanese)